CODEX® Support
  • Welcome
  • CODEX® Instrument Manager (CIM)
    • Overview
    • User Instructions
      • Experiment
      • Maintenance
      • Transfer Data
      • Settings
    • Microscope Specific Settings
      • Microscope Requirements - Overview
      • Keyence BZ-X800 and BZ-X700
        • Requirements
        • BZ-X800 Image Acquisition Settings
          • Multi-Point (BZ-X800)
        • BZ-X700 Image Acquisition Settings
          • Multi-Point (BZ-X700)
        • Exposure steps
      • Leica DMi8
        • Image Acquisition Settings
      • Zeiss Axio Observer
        • Requirements
        • Image Acquisition Settings
      • Exposure Time Settings Considerations
      • Determination of Signal to Noise Ratio
    • Technical Notes
    • Installation
      • CIM Upgrades
  • CODEX® Processor
    • Overview
    • Installation
      • Install
      • Update
      • Version History
    • User Instructions
      • Quick Start
      • Processing Options
      • Segmentation Options
      • Image Analysis Report
    • Technical Notes
      • Expected Input
      • Expected Output
      • Cycle Alignment
      • Background Subtraction
      • Deconvolution
      • Extended Depth of Field
      • Shading Correction
      • Tile Registration
      • Segmentation & Spillover
      • t-SNE
      • FCS Format
    • Troubleshooting
  • CODEX® Multiplex Analysis Viewer (MAV)
    • Overview
    • Installation
      • System Requirements
      • CODEX® MAV - Download & Install
      • Release Notes
    • User Instructions
      • Quick Start
      • Open Experiment
      • Main Menu
      • Overlay Manager
      • Marker Picker
      • Region Image
      • History Panel
      • Save / Open Analysis
      • Clustering
      • Population Table
      • Cells
      • Marker Manager
      • Gating
      • Voronoi Diagram
      • Other Analysis Operations
    • Technical Notes
      • Algorithm Details
      • FCS Format
    • Public Datasets
    • Troubleshooting
  • Workflow Documents
    • CODEX and microscope setup
    • Reagents and staining
  • Appendix
    • End User License Agreement
    • Third-party Licenses
      • CIM
      • Processor
      • MAV
  • PhenoCycler Analysis
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  • Table of Contents
  • Frequently Asked Questions

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Welcome

We’ve rebranded some of our products. CODEX® is now PhenoCycler™.

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Last updated 3 years ago

Was this helpful?

Welcome to CODEX® Support! We’ve rebranded some of our products. CODEX® is now PhenoCycler™. Please see the sections below to get started.

If you have sales inquires, please contact sales@akoyabio.com. If you require additional support, please contact support@akoyabio.com.

Table of Contents

  • CODEX® Instrument Manager (CIM)

  • CODEX® Processor

  • CODEX® Multiplex Analysis Viewer (MAV)

  • Quick Protocol Reference

Frequently Asked Questions

  • How do I run an experiment? Please see Experiment Design and Run Initiation.

  • What is involved in CODEX® image processing? Please see Processor Technical Notes.

  • What kind of data analysis can I do with MAV? Please see Algorithm Details.

  • Where can I find the latest version of Processor? Please see Processor Installation.

  • Where can I find the latest version of MAV? Please see MAV Installation.