CODEX® Support
  • Welcome
  • CODEX® Instrument Manager (CIM)
    • Overview
    • User Instructions
      • Experiment
      • Maintenance
      • Transfer Data
      • Settings
    • Microscope Specific Settings
      • Microscope Requirements - Overview
      • Keyence BZ-X800 and BZ-X700
        • Requirements
        • BZ-X800 Image Acquisition Settings
          • Multi-Point (BZ-X800)
        • BZ-X700 Image Acquisition Settings
          • Multi-Point (BZ-X700)
        • Exposure steps
      • Leica DMi8
        • Image Acquisition Settings
      • Zeiss Axio Observer
        • Requirements
        • Image Acquisition Settings
      • Exposure Time Settings Considerations
      • Determination of Signal to Noise Ratio
    • Technical Notes
    • Installation
      • CIM Upgrades
  • CODEX® Processor
    • Overview
    • Installation
      • Install
      • Update
      • Version History
    • User Instructions
      • Quick Start
      • Processing Options
      • Segmentation Options
      • Image Analysis Report
    • Technical Notes
      • Expected Input
      • Expected Output
      • Cycle Alignment
      • Background Subtraction
      • Deconvolution
      • Extended Depth of Field
      • Shading Correction
      • Tile Registration
      • Segmentation & Spillover
      • t-SNE
      • FCS Format
    • Troubleshooting
  • CODEX® Multiplex Analysis Viewer (MAV)
    • Overview
    • Installation
      • System Requirements
      • CODEX® MAV - Download & Install
      • Release Notes
    • User Instructions
      • Quick Start
      • Open Experiment
      • Main Menu
      • Overlay Manager
      • Marker Picker
      • Region Image
      • History Panel
      • Save / Open Analysis
      • Clustering
      • Population Table
      • Cells
      • Marker Manager
      • Gating
      • Voronoi Diagram
      • Other Analysis Operations
    • Technical Notes
      • Algorithm Details
      • FCS Format
    • Public Datasets
    • Troubleshooting
  • Workflow Documents
    • CODEX and microscope setup
    • Reagents and staining
  • Appendix
    • End User License Agreement
    • Third-party Licenses
      • CIM
      • Processor
      • MAV
  • PhenoCycler Analysis
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  1. Appendix
  2. Third-party Licenses

MAV

PreviousProcessorNextPhenoCycler Analysis

Last updated 5 years ago

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1. Batik SVG DOM: CodexMAV uses the Batik SVG DOM 1.11 ()

Copyright © 2016 The Apache Software Foundation.

This software is provided "as is" without express or implied warranty, and with no claim as to its suitability for any purpose.

Description: Batik SVG DOM implementation.

License: Apache 2.0

Full license text:

2. Batik Svggen: CodexMAV uses the Batik Svggen 1.11 ()

Copyright © 2016 The Apache Software Foundation.

This software is provided "as is" without express or implied warranty, and with no claim as to its suitability for any purpose.

Description: Batik Java2D SVG generator.

License: Apache 2.0

Full license text:

3. commons-io: CodexMAV uses the commons-io 2.5 ()

Copyright © 2002-2019 The Apache Software Foundation.

This software is provided "as is" without express or implied warranty, and with no claim as to its suitability for any purpose.

Description: Utility classes for IO.

License: Apache 2.0

Copyright © 2001-2019 The Apache Software Foundation.

This software is provided "as is" without express or implied warranty, and with no claim as to its suitability for any purpose.

Description: A package of Java utility classes.

License: Apache 2.0

Copyright 2008 Google Inc.

This software is provided "as is" without express or implied warranty, and with no claim as to its suitability for any purpose.

Description: A Java serialization/deserialization library to convert Java Objects into JSON and back.

License: Apache 2.0

Copyright © 2002-2019 The Apache Software Foundation.

This software is provided "as is" without express or implied warranty, and with no claim as to its suitability for any purpose.

Description: Apache HttpComponents Client.

License: Apache 2.0

The ImageJ was released in Sep 22, 2016 by NIH.

This software is provided "as is" without express or implied warranty, and with no claim as to its suitability for any purpose.

Description: Open source Java image processing program.

License: Public Domain

The jai-codec was released in May 16, 2007 by Oracle.

This software is provided "as is" without express or implied warranty, and with no claim as to its suitability for any purpose.

Description: Java Advanced Imaging Codecs supporting support BMP, GIF (read only), FlashPix (read only), JPEG, PNG, PNM, TIFF, and WBMP.

License: Sun

Copyright © 2015-2018 jai-imageio contributors.

This software is provided "as is" without express or implied warranty, and with no claim as to its suitability for any purpose.

Description: This library adds read/write support for the different file types to Java's ImageIO.

License: BSD 3-Clause

The jai_core was released in Jul 10, 2009 by Oracle.

This software is provided "as is" without express or implied warranty, and with no claim as to its suitability for any purpose.

Description: The Java Advanced Imaging API.

License: JDL (Java Distribution License)

The jdom was released in Jun 09, 2012 by JDOM.

This software is provided "as is" without express or implied warranty, and with no claim as to its suitability for any purpose.

Description: A complete, Java-based solution for accessing, manipulating, and outputting XML data.

License: Similar to Apache License but with the acknowledgment clause removed

Copyright (c) 2016 jIconFont.

This software is provided "as is" without express or implied warranty, and with no claim as to its suitability for any purpose.

Description: Font Awesome IconFont.

License: MIT

Copyright (c) 2016 jIconFont.

This software is provided "as is" without express or implied warranty, and with no claim as to its suitability for any purpose.

Description: API to provide icons generated from any IconFont. These icons can be used in Swing.

License: MIT

The jts was released in 14 Dec, 2012 by Tsusiat Software.

This software is provided "as is" without express or implied warranty, and with no claim as to its suitability for any purpose.

Description: API for modelling and manipulating 2-dimensional linear geometry.

License: LGPL

Copyright © 2018 QOS.ch.

This software is provided "as is" without express or implied warranty, and with no claim as to its suitability for any purpose.

Description: Logging framework.

License: Eclipse Public License 1.0, GNU Lesser General Public License

Copyright © 2019 Opencsv.

This software is provided "as is" without express or implied warranty, and with no claim as to its suitability for any purpose.

Description: A simple library for reading and writing CSV in Java.

License: Apache 2.0

Copyright © 2019 Pivotal Software, Inc.

This software is provided "as is" without express or implied warranty, and with no claim as to its suitability for any purpose.

Description: Inversion of control framework.

License: Apache 2.0

Copyright © 2019 Pivotal Software, Inc.

This software is provided "as is" without express or implied warranty, and with no claim as to its suitability for any purpose.

Description: Web MVC library.

License: Apache 2.0

The VorteX was released in 27 Apr, 2018 by Nolanlab.

This software is provided "as is" without express or implied warranty, and with no claim as to its suitability for any purpose.

Description: Java tool for single-cell analysis, clustering and visualization.

License: MIT

Full license text:

4. commons-lang3: CodexMAV uses the commons-lang3 3.8 ()

Full license text:

5. Gson: CodexMAV uses the Gson 2.7 ()

Full license text:

6. httpclient: CodexMAV uses the httpclient 4.5.3 ()

Full license text:

7. ImageJ: CodexMAV uses the ImageJ 1.51g ()

8. jai-codec: CodexMAV uses the jai-codec 1.1.3 ()

Full license text:

9. jai-imageio-core (standalone): CodexMAV uses the jai-imageio-core (standalone) 1.3.1 ()

Full license text:

10. jai_core: CodexMAV uses the jai_core 1.1.3 ()

Full license text:

11. jdom: CodexMAV uses the jdom 2.0.2 ()

Full license text:

12. jiconfont-font_awesome: CodexMAV uses the jiconfont-font_awesome 4.7.0.0 ()

Full license text:

13. jiconfont-swing: CodexMAV uses the jiconfont-swing 1.0.0 ()

Full license text:

14. jts: CodexMAV uses the jts 1.13 ()

Full license text:

15. logback-classic: CodexMAV uses the logback-classic 1.2.3 ()

Full license text (1):

Full license text (2):

16. opencsv: CodexMAV uses the opencsv 4.0 ()

Full license text:

17. Spring Core: CodexMAV uses the Spring Core 5.1.2.RELEASE ()

Full license text:

18. Spring Web MVC: CodexMAV uses the Spring Web MVC 5.1.2.RELEASE ()

Full license text:

19. VorteX: CodexMAV uses the VorteX 1.1 ()

Full license text:

https://xmlgraphics.apache.org/batik/
http://www.apache.org/licenses/LICENSE-2.0.txt
https://xmlgraphics.apache.org/batik/
http://www.apache.org/licenses/LICENSE-2.0.txt
http://commons.apache.org/proper/commons-io/
http://www.apache.org/licenses/LICENSE-2.0.txt
http://commons.apache.org/proper/commons-lang/
http://www.apache.org/licenses/LICENSE-2.0.txt
https://github.com/google/gson
http://www.apache.org/licenses/LICENSE-2.0.txt
http://hc.apache.org/httpcomponents-client
http://www.apache.org/licenses/LICENSE-2.0.txt
http://imagej.net/
http://java.sun.com/products/java-media/jai
https://docs.oracle.com/cd/E19321-01/819-5536-12/C_license.html
https://github.com/jai-imageio/jai-imageio-core
https://tldrlegal.com/license/bsd-3-clause-license-%28revised%29#fulltext
https://jai.dev.java.net/
https://tldrlegal.com/license/java-advanced-imaging-distribution-license-(ver.-1.1.x)#fulltext
http://www.jdom.org
https://raw.githubusercontent.com/hunterhacker/jdom/master/LICENSE.txt
https://github.com/jIconFont/jiconfont-font_awesome
http://opensource.org/licenses/mit-license.html
https://github.com/jIconFont/jiconfont-swing
http://opensource.org/licenses/mit-license.html
https://sourceforge.net/projects/jts-topo-suite/
http://www.gnu.org/licenses/lgpl-3.0.txt
https://logback.qos.ch/
http://www.eclipse.org/legal/epl-v10.html
http://www.gnu.org/licenses/old-licenses/lgpl-2.1.html
http://opencsv.sf.net
http://www.apache.org/licenses/LICENSE-2.0.txt
https://github.com/spring-projects/spring-framework
http://www.apache.org/licenses/LICENSE-2.0.txt
https://github.com/spring-projects/spring-framework
http://www.apache.org/licenses/LICENSE-2.0.txt
https://github.com/nolanlab/vortex
http://opensource.org/licenses/mit-license.html