# CODEX® Processor

- [Overview](https://help.codex.bio/codex/processor/overview.md): We’ve rebranded some of our products. CODEX® is now PhenoCycler™.
- [Installation](https://help.codex.bio/codex/processor/installation.md)
- [Install](https://help.codex.bio/codex/processor/installation/download-and-install.md): CODEX Processor is to be installed on Akoya-provided and validated CODEX Processing computer.
- [Update](https://help.codex.bio/codex/processor/installation/update.md)
- [Version History](https://help.codex.bio/codex/processor/installation/version-history.md)
- [User Instructions](https://help.codex.bio/codex/processor/user-instructions.md)
- [Quick Start](https://help.codex.bio/codex/processor/user-instructions/quick-start.md)
- [Processing Options](https://help.codex.bio/codex/processor/user-instructions/processing-options.md)
- [Segmentation Options](https://help.codex.bio/codex/processor/user-instructions/segmentation-options.md)
- [Image Analysis Report](https://help.codex.bio/codex/processor/user-instructions/image-analysis-report.md)
- [Technical Notes](https://help.codex.bio/codex/processor/technical-notes.md)
- [Expected Input](https://help.codex.bio/codex/processor/technical-notes/expected-input.md)
- [Expected Output](https://help.codex.bio/codex/processor/technical-notes/expected-output.md)
- [Cycle Alignment](https://help.codex.bio/codex/processor/technical-notes/cycle-alignment.md)
- [Background Subtraction](https://help.codex.bio/codex/processor/technical-notes/background-subtraction.md)
- [Deconvolution](https://help.codex.bio/codex/processor/technical-notes/deconvolution.md)
- [Extended Depth of Field](https://help.codex.bio/codex/processor/technical-notes/extended-depth-of-field.md)
- [Shading Correction](https://help.codex.bio/codex/processor/technical-notes/shading-correction.md)
- [Tile Registration](https://help.codex.bio/codex/processor/technical-notes/tile-registration.md)
- [Segmentation & Spillover](https://help.codex.bio/codex/processor/technical-notes/segmentation-and-spillover.md)
- [t-SNE](https://help.codex.bio/codex/processor/technical-notes/t-sne.md)
- [FCS Format](https://help.codex.bio/codex/processor/technical-notes/fcs-format.md)
- [Troubleshooting](https://help.codex.bio/codex/processor/troubleshooting.md)


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