CODEX® Support
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  • Welcome
  • CODEX® Instrument Manager (CIM)
    • Overview
    • User Instructions
    • Microscope Specific Settings
    • Technical Notes
    • Installation
  • CODEX® Processor
    • Overview
    • Installation
    • User Instructions
    • Technical Notes
      • Expected Input
      • Expected Output
      • Cycle Alignment
      • Background Subtraction
      • Deconvolution
      • Extended Depth of Field
      • Shading Correction
      • Tile Registration
      • Segmentation & Spillover
      • t-SNE
      • FCS Format
    • Troubleshooting
  • CODEX® Multiplex Analysis Viewer (MAV)
    • Overview
    • Installation
    • User Instructions
    • Technical Notes
    • Public Datasets
    • Troubleshooting
  • Workflow Documents
    • CODEX and microscope setup
    • Reagents and staining
  • Appendix
    • End User License Agreement
    • Third-party Licenses
  • PhenoCycler Analysis
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  1. CODEX® Processor

Technical Notes

Expected InputExpected OutputCycle AlignmentBackground SubtractionDeconvolutionExtended Depth of FieldShading CorrectionTile RegistrationSegmentation & Spillovert-SNEFCS Format
PreviousImage Analysis ReportNextExpected Input

Last updated 6 years ago

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