> For the complete documentation index, see [llms.txt](https://help.codex.bio/codex/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.codex.bio/codex/technical-notes/codex-and-microscope-setup.md).

# CODEX and microscope setup

CODEX and Microscope setup workflow documents can be found in the CIM section [here](https://help.codex.bio/codex/cim/related-documentation).