CODEX® Support
  • Welcome
  • CODEX® Instrument Manager (CIM)
    • Overview
    • User Instructions
      • Experiment
      • Maintenance
      • Transfer Data
      • Settings
    • Microscope Specific Settings
      • Microscope Requirements - Overview
      • Keyence BZ-X800 and BZ-X700
        • Requirements
        • BZ-X800 Image Acquisition Settings
          • Multi-Point (BZ-X800)
        • BZ-X700 Image Acquisition Settings
          • Multi-Point (BZ-X700)
        • Exposure steps
      • Leica DMi8
        • Image Acquisition Settings
      • Zeiss Axio Observer
        • Requirements
        • Image Acquisition Settings
      • Exposure Time Settings Considerations
      • Determination of Signal to Noise Ratio
    • Technical Notes
    • Installation
      • CIM Upgrades
  • CODEX® Processor
    • Overview
    • Installation
      • Install
      • Update
      • Version History
    • User Instructions
      • Quick Start
      • Processing Options
      • Segmentation Options
      • Image Analysis Report
    • Technical Notes
      • Expected Input
      • Expected Output
      • Cycle Alignment
      • Background Subtraction
      • Deconvolution
      • Extended Depth of Field
      • Shading Correction
      • Tile Registration
      • Segmentation & Spillover
      • t-SNE
      • FCS Format
    • Troubleshooting
  • CODEX® Multiplex Analysis Viewer (MAV)
    • Overview
    • Installation
      • System Requirements
      • CODEX® MAV - Download & Install
      • Release Notes
    • User Instructions
      • Quick Start
      • Open Experiment
      • Main Menu
      • Overlay Manager
      • Marker Picker
      • Region Image
      • History Panel
      • Save / Open Analysis
      • Clustering
      • Population Table
      • Cells
      • Marker Manager
      • Gating
      • Voronoi Diagram
      • Other Analysis Operations
    • Technical Notes
      • Algorithm Details
      • FCS Format
    • Public Datasets
    • Troubleshooting
  • Workflow Documents
    • CODEX and microscope setup
    • Reagents and staining
  • Appendix
    • End User License Agreement
    • Third-party Licenses
      • CIM
      • Processor
      • MAV
  • PhenoCycler Analysis
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On this page
  • For Users
  • For IT Administrators
  • Acquisition computer : Display settings
  • Anti-virus and Firewall Exceptions

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  1. CODEX® Instrument Manager (CIM)

Installation

For Users

CODEX Field Application Scientist will install the CODEX software on the scheduled installation date. They will bring the released software on a USB or external disk in addition to other software dependencies.

We recommend working with Akoya-provided and validated CODEX Acquisition computer.

The Acquisition computer must be prepared prior to the CODEX installation appointment. Successful CIM installation requires the following:

  • CODEX Acquisition computer

  • Network connection to the Processing computer

  • Access to a shared drive on the Processing computer (for Transfer Data)

  • Static IP addresses or domain name

  • User account with administrative access

  • Anti-virus and firewall exceptions for CODEX applications listed below

  • Read-write access to 'C:\Codex' where application settings are stored

For IT Administrators

Please prepare the above items for the CODEX installation appointment. If applicable, please set up additional items listed below.

  • Domain configuration

  • Security suite, including anti-virus, firewall and malware protection

  • Backup solution

  • Other analysis software

Acquisition computer : Display settings

Confirm that display settings for Scale and Layout are set at 100% and that the Display orientation is in Landscape.

Anti-virus and Firewall Exceptions

The following applications must be unblocked for CIM to function properly.

Path

Database

C:\Program Files\MongoDB\Server\4.0\bin\mongod.exe

CIM

C:\Program Files (x86)\Akoya\CodexInstrumentManager\CodexInstrumentManager.exe

Transfer

C:\Program Files (x86)\Akoya\CodexInstrumentManager\CodexTransfer.exe

Updater

C:\Program Files (x86)\Akoya\CodexInstrumentManager\AkoyaUpdater.exe

TIFF Copy

C:\Program Files (x86)\Akoya\CodexInstrumentManager\lib\tiffcp.exe

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Last updated 4 years ago

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Settings > Display > Scale and Layout