CODEX® Multiplex Analysis Viewer (MAV) is an ImageJ plugin used to visualize, annotate and analyze cell populations using CODEX® image and segmentation data.

Core Functionalities

  • Load and display experiment image data, including its various regions, markers and z-slices

  • Provide an interface for hierarchical biaxial gating and KNN/FLANN clustering

  • Allow for versatile population management to combine and re-cluster cell populations

  • Visualize populations on region images and marker expressions in an intuitive heatmap

  • Generate voronoi diagram for visualization and computation of neighboring populations

  • Import and export annotated populations and analysis states