Overlay Manager

In this internal frame you are able to manage all overlays on region images. There are three types of overlay layers: Segmentation, Population and Voronoi.

You can change visibility of each layer by clicking on corresponding checkboxes.

Also you can set opacity of each layer by adjusting corresponding sliders.

All overlays are placed in specific order. You can change order of overlays be clicking on up/down arrow buttons.

Scale bar overlay

This layer shows the distance between two points on the region image.

Tile mask overlay

This layer shows the tile numbers net on the region image.

Note: In different experiments tile ordering may be different.

Segmentation overlay

This layer shows the cell segmentation outlines from the current segmentation run. Outlines are randomly colored.

Population overlay

This layer is connected to the Population Manager and it is disabled by default. It will become enabled after at least one population is created. See Population table for more information.

Voronoi overlay

This layer relates with Voronoi diagram and it is disabled by default. It will become enabled after Voronoi diagram is calculated. See Voronoi diagram for more information.

Removed areas overlay

This layer shows all areas that were removed from the experiment.

Heatmap

This layer relates with Density heatmap and it is disabled by default. It will become enabled after Density heatmap is calculated. See Density heatmap for more information.