Overlay Manager
Overlay Manager
In this internal frame you are able to manage all overlays on region images. There are three types of overlay layers: Segmentation, Population and Voronoi.
Change overlay visibility
You can change visibility of each layer by clicking on corresponding checkboxes.
Change overlay opacity
Also you can set opacity of each layer by adjusting corresponding sliders.
Change overlays order
All overlays are placed in specific order. You can change order of overlays be clicking on up/down arrow buttons.

Scale bar overlay

Scale bar overlay
This layer shows the distance between two points on the region image.

Tile mask overlay

Tile mask overlay
This layer shows the tile numbers net on the region image.
Note: In different experiments tile ordering may be different.

Segmentation overlay

Segmentation overlay
This layer shows the cell segmentation outlines from the current segmentation run. Outlines are randomly colored.

Population overlay

Population overlay
This layer is connected to the Population Manager and it is disabled by default. It will become enabled after at least one population is created. See Population table for more information.

Voronoi overlay

Voronoi overlay
This layer relates with Voronoi diagram and it is disabled by default. It will become enabled after Voronoi diagram is calculated. See Voronoi diagram for more information.
Removed areas overlay
Removed areas overlay
This layer shows all areas that were removed from the experiment.

Heatmap

Density heatmap overlay
This layer relates with Density heatmap and it is disabled by default. It will become enabled after Density heatmap is calculated. See Density heatmap for more information.
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