CODEX® Support

PhenoCycler Analysis

Resources for PhenoCycler analysis.
Commercial software tools: Visiopharm
Open-source software resources:
  • A tutorial on how to use QuPath, CytoMap, and StarDist to segment cells, identify phenotypes with clustering or machine learning, and perform cell neighborhood analysis.
Additional open-source resources.
Data exploration tools
  • Seurat: R tools for spatial data exploration.
  • Squidpy: Python tools for spatial data exploration.
Data integration tools
Last modified 1yr ago