PhenoCycler Analysis

Resources for PhenoCycler analysis.

Commercial software tools: Visiopharm​
Open-source software resources: 
​QuPath and CytoMap​
A tutorial on how to use QuPath, CytoMap, and StarDist to segment cells, identify phenotypes with clustering or machine learning, and perform cell neighborhood analysis. 
Additional open-source resources. 
Data exploration tools
​Seurat: R tools for spatial data exploration. 
​Squidpy: Python tools for spatial data exploration. 
Data integration tools
​MARIO​
​STvEA​
​GLUER​
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MAV

Last modified 1yr ago