The Transfer Data feature in CIM prepares the companion microscope generated image data (raw data) for export to the Processing computer. The acquired image data is transferred to and processed by the remote computer, where the CODEX® processor will generate the processed output data. Other options, for example, an experiment report are also available on this tab.
Please make sure during the experiment runs that each new experiment is placed in a separate main folder such that acquired images for a new experiment is saved within a new folder (the data location is set within the Microscope software)
The output data generated by CODEX® Processor can then be accessed for data analysis using MAV or similar data analysis software.
Please select one experiment at a time. The "Transfer Data" function allows transferring one experiment at a time.
Note: Only Experiments of the last month are displayed, by default. Deselect "Limit to Experiments After Date" to view all, or set a different date range
For more options, right-click on an experiment
This button will verify that the experiment folder has the expected number of images
If the acquisition and processing computers are networked, the assigned Destination folder can be located on the Processing computer.
In the event the computers are not networked, please choose a destination folder within the local Acquisition computer drive.
Copy will start the copying of the data of the selected experiment.
A new window will open, managing the transfer. Now, CIM can be closed, or another screen can be selected.
Copy button will only be enabled when an experiment is selected, the experiment verified (see status on the experiment), and a destination folder has been specified.
To create a pdf report of an experiment, right click on the experiment and select ‘Report’