CODEX® Support
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We’ve rebranded some of our products. CODEX® is now PhenoCycler™.


CODEX® Processor is a desktop Java application that prepares CODEX® images for downstream data analysis.
Processor 1.8.3

Core Functionalities

  • Provide a user-friendly interface to select datasets and parameters to process
  • Prepare raw images for data analysis
    • Align images across cycles
    • Align and stitch tiles across regions
    • Subtract auto-fluorescence
    • Segment and integrate marker intensities for each cell
  • Log and output diagnostic data