We’ve rebranded some of our products. CODEX® is now PhenoCycler™.


CODEX® Processor is a desktop Java application that prepares CODEX® images for downstream data analysis.

Core Functionalities

  • Provide a user-friendly interface to select datasets and parameters to process

  • Prepare raw images for data analysis

    • Align images across cycles

    • Align and stitch tiles across regions

    • Subtract auto-fluorescence

    • Segment and integrate marker intensities for each cell

  • Log and output diagnostic data

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