CODEX® MAV - Download & Install

Update
The latest CODEX® MAV version is 1.5
Please update via ImageJ Updater (on startup or Help > Update...).
New Installation
Download
Please download ImageJ Fiji from here.
Choose the appropriate version. For windows users, download  fiji-win64.zip.
Unzipping to a known folder with proper user permissions, e.g. 'C:\Users\<user>\Documents'.
Fiji updater will not work without read-write permissions.
Please note, CODEX MAV is Fiji version specific. Please download the appropriate version linked above for full functionality. 
Add CODEX® MAV Update Site
Start Fiji.
Click on Help > Update...
After Updater scans for updates, click the 'Manage update sites' button.
Click 'Add update site'.
In the new line, add the following.
Name
URL
CODEX MAV
http://sites.imagej.net/Akoya/
Click the checkbox to enable updates.
Click 'Close'.
Click 'Apply changes'.
After the update completes, restart Fiji.
Check that 'CodexMAV' is available as a menu item.
MacOS
Please download and install JDK or JRE 1.8 that supports JavaFX from here: Liberica or Zulu.
Then go to {Fiji_home} directory. By default, there could be embedded JRE in the 'java' folder. If it exists, please remove 'macos' folder from the 'java' folder.
How to find {Fiji_home} directory on macOS: 
1.Right-click on the Fiji icon in the dock -> Options -> Show in Finder
2.Right-click on the Fiji app in Finder -> Show package contents
You can check your version of Java in FIJI by clicking Help -> About ImageJ...
MAV 1.5 will be the last version to be supported on MAC OS

System Requirements

Release Notes

Last modified 3mo ago

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Contents

Update

New Installation

Download

Add CODEX® MAV Update Site

MacOS