CODEX® MAV - Download & Install

Update

Latest CODEX® MAV version is 1.4 Please update via ImageJ Updater (on startup or Help > Update...).

New Installation

Download

Please download ImageJ Fiji from here. Unzipping to a known folder with proper user permissions, e.g. 'C:\Users\<user>\Documents'. Fiji updater will not work without read-write permissions.

Add CODEX® MAV Update Site

Start Fiji. Click on Help > Update...

After Updater scans for updates, click the 'Manage update sites' button. Click 'Add update site'. In the new line, add the following.

Name

URL

CODEX MAV

http://sites.imagej.net/Akoya/

Click the checkbox to enable updates.

Click 'Close'. Click 'Apply changes'. After the update completes, restart Fiji. Check that 'CodexMAV' is available as a menu item.

MacOS

Please download and install JDK or JRE 1.8 that supports JavaFX from here: Liberica or Zulu.

Then go to {Fiji_home} directory. By default, there could be embedded JRE in the 'java' folder. If it exists, please remove 'macos' folder from the 'java' folder.

How to find {Fiji_home} directory on macOS:

  1. Right-click on the Fiji icon in the dock -> Options -> Show in Finder

  2. Right-click on the Fiji app in Finder -> Show package contents

You can check your version of Java in FIJI by clicking Help -> About ImageJ...