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CODEX® MAV - Download & Install

Update

The latest CODEX® MAV version is 1.5 Please update via ImageJ Updater (on startup or Help > Update...).

New Installation

Download

Please download ImageJ Fiji from here. Choose the appropriate version. For windows users, download fiji-win64.zip. Unzipping to a known folder with proper user permissions, e.g. 'C:\Users\<user>\Documents'. Fiji updater will not work without read-write permissions. Please note, CODEX MAV is Fiji version specific. Please download the appropriate version linked above for full functionality.

Add CODEX® MAV Update Site

Start Fiji. Click on Help > Update...
After Updater scans for updates, click the 'Manage update sites' button. Click 'Add update site'. In the new line, add the following.
Name
URL
CODEX MAV
http://sites.imagej.net/Akoya/
Click the checkbox to enable updates.
Click 'Close'. Click 'Apply changes'. After the update completes, restart Fiji. Check that 'CodexMAV' is available as a menu item.

MacOS

Please download and install JDK or JRE 1.8 that supports JavaFX from here: Liberica or Zulu.
Then go to {Fiji_home} directory. By default, there could be embedded JRE in the 'java' folder. If it exists, please remove 'macos' folder from the 'java' folder.
How to find {Fiji_home} directory on macOS:
  1. 1.
    Right-click on the Fiji icon in the dock -> Options -> Show in Finder
  2. 2.
    Right-click on the Fiji app in Finder -> Show package contents
You can check your version of Java in FIJI by clicking Help -> About ImageJ...
MAV 1.5 will be the last version to be supported on MAC OS
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Last modified 1yr ago