CODEX® Support
  • Welcome
  • CODEX® Instrument Manager (CIM)
    • Overview
    • User Instructions
      • Experiment
      • Maintenance
      • Transfer Data
      • Settings
    • Microscope Specific Settings
      • Microscope Requirements - Overview
      • Keyence BZ-X800 and BZ-X700
        • Requirements
        • BZ-X800 Image Acquisition Settings
          • Multi-Point (BZ-X800)
        • BZ-X700 Image Acquisition Settings
          • Multi-Point (BZ-X700)
        • Exposure steps
      • Leica DMi8
        • Image Acquisition Settings
      • Zeiss Axio Observer
        • Requirements
        • Image Acquisition Settings
      • Exposure Time Settings Considerations
      • Determination of Signal to Noise Ratio
    • Technical Notes
    • Installation
      • CIM Upgrades
  • CODEX® Processor
    • Overview
    • Installation
      • Install
      • Update
      • Version History
    • User Instructions
      • Quick Start
      • Processing Options
      • Segmentation Options
      • Image Analysis Report
    • Technical Notes
      • Expected Input
      • Expected Output
      • Cycle Alignment
      • Background Subtraction
      • Deconvolution
      • Extended Depth of Field
      • Shading Correction
      • Tile Registration
      • Segmentation & Spillover
      • t-SNE
      • FCS Format
    • Troubleshooting
  • CODEX® Multiplex Analysis Viewer (MAV)
    • Overview
    • Installation
      • System Requirements
      • CODEX® MAV - Download & Install
      • Release Notes
    • User Instructions
      • Quick Start
      • Open Experiment
      • Main Menu
      • Overlay Manager
      • Marker Picker
      • Region Image
      • History Panel
      • Save / Open Analysis
      • Clustering
      • Population Table
      • Cells
      • Marker Manager
      • Gating
      • Voronoi Diagram
      • Other Analysis Operations
    • Technical Notes
      • Algorithm Details
      • FCS Format
    • Public Datasets
    • Troubleshooting
  • Workflow Documents
    • CODEX and microscope setup
    • Reagents and staining
  • Appendix
    • End User License Agreement
    • Third-party Licenses
      • CIM
      • Processor
      • MAV
  • PhenoCycler Analysis
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  • MacOS

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  1. CODEX® Multiplex Analysis Viewer (MAV)
  2. Installation

CODEX® MAV - Download & Install

PreviousSystem RequirementsNextRelease Notes

Last updated 3 years ago

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Update

The latest CODEX® MAV version is 1.5 Please update via ImageJ Updater (on startup or Help > Update...).

New Installation

Download

Add CODEX® MAV Update Site

Start Fiji. Click on Help > Update...

After Updater scans for updates, click the 'Manage update sites' button. Click 'Add update site'. In the new line, add the following.

Name

URL

CODEX MAV

http://sites.imagej.net/Akoya/

Click the checkbox to enable updates.

Click 'Close'. Click 'Apply changes'. After the update completes, restart Fiji. Check that 'CodexMAV' is available as a menu item.

MacOS

Then go to {Fiji_home} directory. By default, there could be embedded JRE in the 'java' folder. If it exists, please remove 'macos' folder from the 'java' folder.

How to find {Fiji_home} directory on macOS:

  1. Right-click on the Fiji icon in the dock -> Options -> Show in Finder

  2. Right-click on the Fiji app in Finder -> Show package contents

You can check your version of Java in FIJI by clicking Help -> About ImageJ...

MAV 1.5 will be the last version to be supported on MAC OS

Please download ImageJ Fiji from . Choose the appropriate version. For windows users, download fiji-win64.zip. Unzipping to a known folder with proper user permissions, e.g. 'C:\Users\<user>\Documents'. Fiji updater will not work without read-write permissions. Please note, CODEX MAV is Fiji version specific. Please download the appropriate version linked above for full functionality.

Please download and install JDK or JRE 1.8 that supports JavaFX from here: or .

here
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