CODEX® Support
  • Welcome
  • CODEX® Instrument Manager (CIM)
    • Overview
    • User Instructions
      • Experiment
      • Maintenance
      • Transfer Data
      • Settings
    • Microscope Specific Settings
      • Microscope Requirements - Overview
      • Keyence BZ-X800 and BZ-X700
        • Requirements
        • BZ-X800 Image Acquisition Settings
          • Multi-Point (BZ-X800)
        • BZ-X700 Image Acquisition Settings
          • Multi-Point (BZ-X700)
        • Exposure steps
      • Leica DMi8
        • Image Acquisition Settings
      • Zeiss Axio Observer
        • Requirements
        • Image Acquisition Settings
      • Exposure Time Settings Considerations
      • Determination of Signal to Noise Ratio
    • Technical Notes
    • Installation
      • CIM Upgrades
  • CODEX® Processor
    • Overview
    • Installation
      • Install
      • Update
      • Version History
    • User Instructions
      • Quick Start
      • Processing Options
      • Segmentation Options
      • Image Analysis Report
    • Technical Notes
      • Expected Input
      • Expected Output
      • Cycle Alignment
      • Background Subtraction
      • Deconvolution
      • Extended Depth of Field
      • Shading Correction
      • Tile Registration
      • Segmentation & Spillover
      • t-SNE
      • FCS Format
    • Troubleshooting
  • CODEX® Multiplex Analysis Viewer (MAV)
    • Overview
    • Installation
      • System Requirements
      • CODEX® MAV - Download & Install
      • Release Notes
    • User Instructions
      • Quick Start
      • Open Experiment
      • Main Menu
      • Overlay Manager
      • Marker Picker
      • Region Image
      • History Panel
      • Save / Open Analysis
      • Clustering
      • Population Table
      • Cells
      • Marker Manager
      • Gating
      • Voronoi Diagram
      • Other Analysis Operations
    • Technical Notes
      • Algorithm Details
      • FCS Format
    • Public Datasets
    • Troubleshooting
  • Workflow Documents
    • CODEX and microscope setup
    • Reagents and staining
  • Appendix
    • End User License Agreement
    • Third-party Licenses
      • CIM
      • Processor
      • MAV
  • PhenoCycler Analysis
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  • New Installation
  • Download
  • Add CODEX® MAV Update Site
  • MacOS

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  1. CODEX® Multiplex Analysis Viewer (MAV)
  2. Installation

CODEX® MAV - Download & Install

PreviousSystem RequirementsNextRelease Notes

Last updated 3 years ago

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Update

The latest CODEX® MAV version is 1.5 Please update via ImageJ Updater (on startup or Help > Update...).

New Installation

Download

Please download ImageJ Fiji from here. Choose the appropriate version. For windows users, download fiji-win64.zip. Unzipping to a known folder with proper user permissions, e.g. 'C:\Users\<user>\Documents'. Fiji updater will not work without read-write permissions. Please note, CODEX MAV is Fiji version specific. Please download the appropriate version linked above for full functionality.

Add CODEX® MAV Update Site

Start Fiji. Click on Help > Update...

After Updater scans for updates, click the 'Manage update sites' button. Click 'Add update site'. In the new line, add the following.

Name

URL

CODEX MAV

http://sites.imagej.net/Akoya/

Click the checkbox to enable updates.

Click 'Close'. Click 'Apply changes'. After the update completes, restart Fiji. Check that 'CodexMAV' is available as a menu item.

MacOS

Please download and install JDK or JRE 1.8 that supports JavaFX from here: Liberica or Zulu.

Then go to {Fiji_home} directory. By default, there could be embedded JRE in the 'java' folder. If it exists, please remove 'macos' folder from the 'java' folder.

How to find {Fiji_home} directory on macOS:

  1. Right-click on the Fiji icon in the dock -> Options -> Show in Finder

  2. Right-click on the Fiji app in Finder -> Show package contents

You can check your version of Java in FIJI by clicking Help -> About ImageJ...

MAV 1.5 will be the last version to be supported on MAC OS