CODEX® Support
  • Welcome
  • CODEX® Instrument Manager (CIM)
    • Overview
    • User Instructions
      • Experiment
      • Maintenance
      • Transfer Data
      • Settings
    • Microscope Specific Settings
      • Microscope Requirements - Overview
      • Keyence BZ-X800 and BZ-X700
        • Requirements
        • BZ-X800 Image Acquisition Settings
          • Multi-Point (BZ-X800)
        • BZ-X700 Image Acquisition Settings
          • Multi-Point (BZ-X700)
        • Exposure steps
      • Leica DMi8
        • Image Acquisition Settings
      • Zeiss Axio Observer
        • Requirements
        • Image Acquisition Settings
      • Exposure Time Settings Considerations
      • Determination of Signal to Noise Ratio
    • Technical Notes
    • Installation
      • CIM Upgrades
  • CODEX® Processor
    • Overview
    • Installation
      • Install
      • Update
      • Version History
    • User Instructions
      • Quick Start
      • Processing Options
      • Segmentation Options
      • Image Analysis Report
    • Technical Notes
      • Expected Input
      • Expected Output
      • Cycle Alignment
      • Background Subtraction
      • Deconvolution
      • Extended Depth of Field
      • Shading Correction
      • Tile Registration
      • Segmentation & Spillover
      • t-SNE
      • FCS Format
    • Troubleshooting
  • CODEX® Multiplex Analysis Viewer (MAV)
    • Overview
    • Installation
      • System Requirements
      • CODEX® MAV - Download & Install
      • Release Notes
    • User Instructions
      • Quick Start
      • Open Experiment
      • Main Menu
      • Overlay Manager
      • Marker Picker
      • Region Image
      • History Panel
      • Save / Open Analysis
      • Clustering
      • Population Table
      • Cells
      • Marker Manager
      • Gating
      • Voronoi Diagram
      • Other Analysis Operations
    • Technical Notes
      • Algorithm Details
      • FCS Format
    • Public Datasets
    • Troubleshooting
  • Workflow Documents
    • CODEX and microscope setup
    • Reagents and staining
  • Appendix
    • End User License Agreement
    • Third-party Licenses
      • CIM
      • Processor
      • MAV
  • PhenoCycler Analysis
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  • Download
  • Install CODEX Processor
  • Activate Microvolution License (Optional)
  • Rehosting a Microvolution License

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  1. CODEX® Processor
  2. Installation

Install

CODEX Processor is to be installed on Akoya-provided and validated CODEX Processing computer.

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Last updated 2 years ago

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Download

To install Processor, please download the latest version from If you are just getting started, please download all the installation software in the table below.

Processor 1.8 generates a CODEX QPTIFF compatible with whole slide image analysis tools such as Visiopharm and QuPath.

Important: Please see Processor 1.8 release notes for additional information on CIM version requirements and CODEX MAV compatibility.

Open-source analysis technotes are available for and .

When first installing version 1.7 or version 1.8 please uninstall all other Java versions and install OpenJDK.

Name

Details

CodexProcessor-<version>-Installer.exe

Processor installer

cuda_9.2.148_win10.exe

CUDA Toolkit 9.2 installer

java-1.8.0-openjdk-1.8.0.232-3.b09.redhat.windows.x86_64.msi

OpenJDK 8 installer

CODEX processor 1.7 and 1.8 Release notes

Release notes

Install CODEX Processor

1) Run 'java-1.8.0-openjdk-1.8.0.232-3.b09.redhat.windows.x86_64.msi'. 2) Run 'cuda_9.2.148_win10.exe'. 3) Run 'CodexProcessor-<version>-Installer.exe'.

Activate Microvolution License (Optional)

1) Go to 'C:\Akoya Biosciences\CodexProcessor'. 2) Double-click 'microvolution-activator.bat'. 3) Type in the license key provided. 4) Check that 'microvolution.lic' file is located in'C:\Akoya Biosciences\CodexProcessor'.

If firewall exceptions cannot be made, please contact Microvolution for manual activation. Note that this will disable rehosting to different systems.

Rehosting a Microvolution License

A Microvolution license key can be rehosted to a different computer after deactivating the key on the originally installed PC. To do this, you will use the same 'microvolution-activator.bat' file used to activate the license. Note that this requires internet access and that the computer can reach the license server at licensing.microvolution.com.

  1. Go to 'C:\Akoya Biosciences\CodexProcessor'

  2. Double-click 'microvolution-activator.bat'. You should see a message noting that there is already an active license

  3. When prompted, type in your license key

  4. The license should now be deactivated and can be used on the same PC or a different PC.

this Box link.
PhenoCycler
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