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Settings

Set up options for logging, ports, updates, and notification, etc.

Select the "Settings" feature from the menu on the CIM window
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Microscope
Allows selecting the appropriate Microscope that will be used for CODEX® runs. 
Please make sure the Microscope software is also open simultaneously to allow detection of the Microscope by the CIM software. 
The microscope software can be selected from the drop-down menu, or automatically detected using the ‘Detect’ button
"Detect" button allows ensuring that CIM can detect the Microscope in use
Select "Yes" to set the selected Microscope for CODEX runs
Set Log Folder
Allows selecting the folder where the CODEX®  run logs will be saved.
Comm ports
Click the "Instrument Check" button to allow CIM to perform an Instrument Pre-check 
Manual
"Manual" button allows opening the User Manual on a New Window
Please note that this feature requires that the PDF reader is installed on the PC
Fluidics Check
"Fluidics Check" button allows CIM to ensure that the instrument has enough of all the reagents required for the selected number of CODEX® cycles
CODEX® Database and Server Connections
Allows ensuring that the database service is running and the computer is connected to the server.
Updates
"Check for Update" allows the user to check for CIM software updates
Email Setup and Test
This feature allows to set up and save the email addresses that would like to be notified of any warning messages during the run
"Send Test" buttons allow the user(s) to ensure that they are receiving emails from the CIM
Please make sure to enter the emails of all the users wanting to be notified, in the second row, with one email address per line
Email Logs to Akoya Support
Allows uploading all the necessary CODEX® run logs from the Logs folder. 
Click the "Upload" Button to send the log files to Akoya Support 
Note: User may choose to send several log files at a time
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Transfer Data

Next - CODEX® Instrument Manager (CIM)

Microscope Specific Settings

Last modified 3yr ago

Settings

Select the "Settings" feature from the menu on the CIM window

​

Microscope

"Detect" button allows ensuring that CIM can detect the Microscope in use

Select "Yes" to set the selected Microscope for CODEX runs

Set Log Folder

Comm ports

Click the "Instrument Check" button to allow CIM to perform an Instrument Pre-check

Manual

"Manual" button allows opening the User Manual on a New Window

Fluidics Check

"Fluidics Check" button allows CIM to ensure that the instrument has enough of all the reagents required for the selected number of CODEX® cycles

CODEX® Database and Server Connections

Updates

"Check for Update" allows the user to check for CIM software updates

Email Setup and Test

"Send Test" buttons allow the user(s) to ensure that they are receiving emails from the CIM

Email Logs to Akoya Support

Click the "Upload" Button to send the log files to Akoya Support